Apuã César de Miranda Paquola

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PhD in Bioinformatics

Current projects

  • Large-scale analysis of horizontal gene transfer in prokaryotes.
  • Computational study of the Caulobacter crescentus SOS regulon.
  • Statistical analysis of the colocalization of genomic positions.


  • Reis EM et al. Large-scale transcriptome analyses reveal new genetic marker candidates of head, neck, and thyroid cancer. Cancer Res. 2005 Mar 1;65(5):1693-9.
  • da Costa RM, Riou L, Paquola A, Menck CF, Sarasin A. Transcriptional profiles of unirradiated or UV-irradiated human cells expressing either the cancer-prone XPB/CS allele or the noncancer-prone XPB/TTD allele. Oncogene. 2005 Feb 17;24(8):1359-74.
  • Reis EM et al. Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer. Oncogene. 2004 Aug 26;23(39):6684-92.
  • Louro R, Nakaya HI, Paquola AC, Martins EA, da Silva AM, Verjovski-Almeida S, Reis EM. RASL11A, member of a novel small monomeric GTPase gene family, is down-regulated in prostate tumors. Biochem Biophys Res Commun. 2004 Apr 9;316(3):618-27.
  • Brentani H et al. The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags. Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13418-23.
  • Verjovski-Almeida S, DeMarco R, Martins EA, Guimaraes PE, Ojopi EP, Paquola AC, Piazza JP, Nishiyama MY Jr, Kitajima JP, Adamson RE, Ashton PD, Bonaldo MF, Coulson PS, Dillon GP, Farias LP, Gregorio SP, Ho PL, Leite RA, Malaquias LC, Marques RC, Miyasato PA, Nascimento AL, Ohlweiler FP, Reis EM, Ribeiro MA, Sa RG, Stukart GC, Soares MB, Gargioni C, Kawano T, Rodrigues V, Madeira AM, Wilson RA, Menck CF, Setubal JC, Leite LC, Dias-Neto E. Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni. Nat Genet. 2003 Oct;35(2):148-57. Epub 2003 Sep 14.
  • Paquola AC, Nishyiama MY Jr, Reis EM, da Silva AM, Verjovski-Almeida S. ESTWeb: bioinformatics services for EST sequencing projects. Bioinformatics. 2003 Aug 12;19(12):1587-8.
  • Paquola AC, Machado AA, Reis EM, Da Silva AM, Verjovski-Almeida S. Zerg: a very fast BLAST parser library. Bioinformatics. 2003 May 22;19(8):1035-6.
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